Optimizing Miscanthus for the Sustainable Bioeconomy:From Genes to Products

In this Research Topic we report advances in fundamental and applied aspects of the perennial C4 bioenergy crop Miscanthus (Miscanthus spp.) and its role in mitigating climate change as part of the bioeconomy. Miscanthus is extremely well suited for bioenergy, biofuel and bioproduct production over a wide geographic area including Europe and North America as well as its native Asia. Miscanthus offers a unique perspective within plant science: the challenge is to domesticate this novel crop for diverse environments and uses while simultaneously developing sustainable value chains to displace fossil fuels and contribute to climate change mitigation. Contributions to this Research Topic were offered from leading Miscanthus researchers from different parts of the world. We accepted 16 articles from 95 authors, which have generated 21,161 views at March 26 2018. Nine of the articles are the output of the European FP7 OPTIMISC project and describe multiple experiments investigating a common set of Miscanthus genotypes in Europe and Asia. These papers are complemented by seven additional articles from global authors, providing a comprehensive analysis of the state of the art of Miscanthus research and application

Spindle Checkpoint Protein Dynamics at Kinetochores in Living Cells

BACKGROUND: To test current models for how unattached and untense kinetochores prevent Cdc20 activation of the anaphase-promoting complex/cyclosome (APC/C) throughout the spindle and the cytoplasm, we used GFP fusions and live-cell imaging to quantify the abundance and dynamics of spindle checkpoint proteins Mad1, Mad2, Bub1, BubR1, Mps1, and Cdc20 at kinetochores during mitosis in living PtK2 cells. RESULTS: Unattached kinetochores in prometaphase bound on average only a small fraction (estimated at 500-5000 molecules) of the total cellular pool of each spindle checkpoint protein. Measurements of fluorescence recovery after photobleaching (FRAP) showed that GFP-Cdc20 and GFP-BubR1 exhibit biphasic exponential kinetics at unattached kinetochores, with approximately 50% displaying very fast kinetics (t1/2 of approximately 1-3 s) and approximately 50% displaying slower kinetics similar to the single exponential kinetics of GFP-Mad2 and GFP-Bub3 (t1/2 of 21-23 s). The slower phase of GFP-Cdc20 likely represents complex formation with Mad2 since it was tension insensitive and, unlike the fast phase, it was absent at metaphase kinetochores that lack Mad2 but retain Cdc20 and was absent at unattached prometaphase kinetochores for the Cdc20 derivative GFP-Cdc20delta1-167, which lacks the major Mad2 binding domain but retains kinetochore localization. GFP-Mps1 exhibited single exponential kinetics at unattached kinetochores with a t1/2 of approximately 10 s, whereas most GFP-Mad1 and GFP-Bub1 were much more stable components. CONCLUSIONS: Our data support catalytic models of checkpoint activation where Mad1 and Bub1 are mainly resident, Mad2 free of Mad1, BubR1 and Bub3 free of Bub1, Cdc20, and Mps1 dynamically exchange as part of the diffuse wait-anaphase signal; and Mad2 interacts with Cdc20 at unattached kinetochores

Spindle Checkpoint Protein Dynamics at Kinetochores in Living Cells

BACKGROUND: To test current models for how unattached and untense kinetochores prevent Cdc20 activation of the anaphase-promoting complex/cyclosome (APC/C) throughout the spindle and the cytoplasm, we used GFP fusions and live-cell imaging to quantify the abundance and dynamics of spindle checkpoint proteins Mad1, Mad2, Bub1, BubR1, Mps1, and Cdc20 at kinetochores during mitosis in living PtK2 cells. RESULTS: Unattached kinetochores in prometaphase bound on average only a small fraction (estimated at 500-5000 molecules) of the total cellular pool of each spindle checkpoint protein. Measurements of fluorescence recovery after photobleaching (FRAP) showed that GFP-Cdc20 and GFP-BubR1 exhibit biphasic exponential kinetics at unattached kinetochores, with approximately 50% displaying very fast kinetics (t1/2 of approximately 1-3 s) and approximately 50% displaying slower kinetics similar to the single exponential kinetics of GFP-Mad2 and GFP-Bub3 (t1/2 of 21-23 s). The slower phase of GFP-Cdc20 likely represents complex formation with Mad2 since it was tension insensitive and, unlike the fast phase, it was absent at metaphase kinetochores that lack Mad2 but retain Cdc20 and was absent at unattached prometaphase kinetochores for the Cdc20 derivative GFP-Cdc20delta1-167, which lacks the major Mad2 binding domain but retains kinetochore localization. GFP-Mps1 exhibited single exponential kinetics at unattached kinetochores with a t1/2 of approximately 10 s, whereas most GFP-Mad1 and GFP-Bub1 were much more stable components. CONCLUSIONS: Our data support catalytic models of checkpoint activation where Mad1 and Bub1 are mainly resident, Mad2 free of Mad1, BubR1 and Bub3 free of Bub1, Cdc20, and Mps1 dynamically exchange as part of the diffuse wait-anaphase signal; and Mad2 interacts with Cdc20 at unattached kinetochores

Seasonality and buoyancy suppression of turbulence in the Bay of Bengal

Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters, 46(8), (2019):4346-4355, doi:10.1029/2018GL081577.A yearlong record from moored current, temperature, conductivity, and four mixing meters (χpods) in the northernmost international waters of the Bay of Bengal quantifies upper‐ocean turbulent diffusivity of heat (Kt) and its response to the Indian monsoon. Data indicate (1) pronounced intermittency in turbulence at semidiurnal, diurnal, and near‐inertial timescales, (2) strong turbulence above 25‐m depth during the SW (summer) and NE (winter) monsoon relative to the transition periods (compare Kt > 10−4 m2/s to Kt  ∼ 10−5 m2/s, and (3) persistent suppression of turbulence (Kt < 10−5 m2/s) for 3 to 5 months in the latter half of the SW monsoon coincident with enhanced near‐surface stratification postarrival of low‐salinity water from the Brahmaputra‐Ganga‐Meghna delta and monsoonal precipitation. This suppression promotes maintenance of the low‐salinity surface waters within the interior of the bay preconditioning the upper northern Indian Ocean for the next year's monsoon.This work was supported by the U.S. Office of Naval Research (ONR) Grants N00014‐14‐1‐0236 and N00014‐17‐1‐2472, and the Ocean Mixing and Monsoon program of the Indian Ministry of Earth Sciences. The deployment of the Woods Hole Oceanographic Institution mooring and RW and JTF were supported by ONR Grant N00014‐13‐1‐0453. The deployment and recovery of the mooring were carried out by RV Sagar Nidhi and RV Sagar Kanya, respectively, with the help of the crew and science parties. Thanks to National Institute of Ocean Technology (India) for buoy support. The authors acknowledge invaluable discussions with Johannes Becherer, Deepak Cherian, and Sally Warner at CEOAS, OSU, and Dipanjan Chaudhuri, J Sree Lekha, and Debasis Sengupta at CAOS, IISc. The authors thank two anonymous reviewers for their detailed reviews, which have helped sharpen many aspects of this paper. Data can be accessed as described in section S2.2019-10-0

Restorative Youth Sports: An Applied Model for Resolving Conflicts and Building Positive Relationships

When handled effectively, conflict provides opportunities to strengthen relationships and assist youth in developing peaceful conflict resolution skills. Sport participation is one context in which youth develop skills and encounter conflict. The purpose of this study was to develop an applied model that addresses conflict resolution in sport-based youth development programs. Using qualitative interviewing, a community-engaged approach guided the selection of participants and data analysis. We used the models of restorative practice and Teaching Personal and Social Responsibility (TPSR) through sports to guide our study. Following interviews with a variety of community partners, we found that the values of sport are often in conflict with restorative practices. However, a relational approach such as TPSR aligns well with the values of restorative practices. Based on our findings, an applied model was developed to illustrate how restorative practice can be utilized in a sport context. The Restorative Youth Sports (RYS) model recognizes that conflicts and tension are natural and inherent to all relationships. When handled appropriately, conflict provides opportunities to strengthen relationships. Youth sport provides a unique context where youth are presented with problems and conflicts to solve and promote healthy relationships among youth

Modification of upper-ocean temperature structure by subsurface mixing in the presence of strong salinity stratification

Author Posting. © The Oceanography Society, 2016. This article is posted here by permission of The Oceanography Society for personal use, not for redistribution. The definitive version was published in Oceanography 29, no. 2 (2016): 62–71, doi:10.5670/oceanog.2016.39.The Bay of Bengal has a complex upper-ocean temperature and salinity structure that is, in places, characterized by strong salinity stratification and multiple inversions in temperature. Here, two short time series from continuously profiling floats, equipped with microstructure sensors to measure subsurface mixing, are used to highlight implications of complex hydrography on upper-ocean heat content and the evolution of sea surface temperature. Weak mixing coupled with the existence of subsurface warm layers suggest the potential for storage of heat below the surface mixed layer over relatively long time scales. On the diurnal time scale, these data demonstrate the competing effects of surface heat flux and subsurface mixing in the presence of thin salinity-stratified mixed layers with temperature inversions. Pre-existing stratification can amplify the sea surface temperature response through control on the vertical extent of heating and cooling by surface fluxes. In contrast, subsurface mixing entrains relatively cool water during the day and relatively warm water during the night, damping the response to daytime heating and nighttime cooling at the surface. These observations hint at the challenges involved in improving monsoon prediction at longer, intraseasonal time scales as models may need to resolve upper-ocean variability over short time and fine vertical scales.This work was funded by Office of Naval Research grants N00014-14-1-0236 (ELS, JNM), N00014-13-1-0483 (DLR), N00014-13-1- 0453 (JTF), and N00014-12-1-0938 (SKV, AG)